Index

A

add_ROIs() (sima.ImagingDataset method)

C

ca1pc() (in module sima.segment)

coords (sima.ROI.ROI attribute)

D

delete_ROIs() (sima.ImagingDataset method)

E

export_averages() (sima.ImagingDataset method) export_frames() (sima.ImagingDataset method)

export_signals() (sima.ImagingDataset method) extract() (sima.imaging.ImagingDataset method) (sima.ImagingDataset method)

F

frame_shape (sima.imaging.ImagingDataset attribute)

H

HDF5 (class in sima.iterables)

hmm() (in module sima.motion)

I

id (sima.ROI.ROI attribute) im_shape (sima.ROI.ROI attribute) ImagingDataset (class in sima)

import_transformed_ROIs() (sima.ImagingDataset method) invalid_frames (sima.imaging.ImagingDataset attribute)

L

label (sima.ROI.ROI attribute)

load() (sima.ImagingDataset class method) (sima.ROI.ROIList class method)

M

mask (sima.ROI.ROI attribute)

MultiPageTIFF (class in sima.iterables)

N

normcut() (in module sima.segment) num_channels (sima.imaging.ImagingDataset attribute) num_columns (sima.imaging.ImagingDataset attribute) num_cycles (sima.imaging.ImagingDataset attribute)

num_frames (sima.imaging.ImagingDataset attribute) num_planes (sima.imaging.ImagingDataset attribute) num_rows (sima.imaging.ImagingDataset attribute)

P

polygons (sima.ROI.ROI attribute)

R

ROI (class in sima.ROI) ROIList (class in sima.ROI)

ROIs (sima.imaging.ImagingDataset attribute)

S

save() (sima.ROI.ROIList method) segment() (sima.imaging.ImagingDataset method) (sima.ImagingDataset method) signals() (sima.ImagingDataset method) sima.extract (module) sima.imaging (module) sima.iterables (module)

sima.motion (module) sima.ROI (module) sima.segment (module) stica() (in module sima.segment) subset() (sima.ROI.ROIList method)

T

tags (sima.ROI.ROI attribute) time_averages (sima.imaging.ImagingDataset attribute) timestamp (sima.ROI.ROIList attribute)

todict() (sima.ROI.ROI method) transform() (sima.ROI.ROIList method)