SIMA API

The public API of the SIMA package is described below. Functionality not described in this documentation may not remain stable across versions and should therefore not be used.

• Sequence objects
• ImagingDataset objects
• Motion correction
• Segmentation
  • Segmentation strategies
    • Plane-Wise Segmentation
    • Spatialtemporal Independent Component Analysis
    • Normalized cuts
      • Affinity Matrix Methods
    • CA1 pyramidal cells
  • Post-Processing Steps
• Regions of Interest (ROIs)
  • ROI class
  • ROIList class
• Signal extraction
  • Details